Current Positions

To apply for this job, please visit http://staffcareers.ubc.ca/34882

Closing Date: September 1, 2019

Job Summary
Conduct bioinformatics data analysis and software development projects in a highly interdisciplinary, dynamic and team-based environment. Participation in a range of projects will be expected, in both supporting and more primary roles, with much opportunity to learn new skills and contribute to research on the genetics and genomics of human psychiatric and neurological conditions (including autism, schizophrenia and fetal alcohol spectrum disorder).

Organizational Status
The position is in the Pavlidis lab, based in the Michael Smith Laboratories at the Point Grey Campus. Will work as part of a team in Dr. Pavlidis’ lab (approx. 15 personnel including trainees and staff).

Work Performed
 
We anticipate this position will involve a mix of data analysis and software development, with proportions depending on experience, skills and interests of the candidate as well as needs. Particular anticipated roles:
– Develops, implements and maintains small modules of web-based bioinformatics software and applications.
– Develops and maintains software pipelines and standard operating procedures for bioinformatics data analysis.
– Conducts and supports bioinformatics and statistical analyses and interpretation of DNA and RNA sequencing data in internal and collaborative research projects using appropriate software tools and custom programs and scripts.
– Creates and maintains developer documentation.
– Documents and communicates analysis results in written and oral form.
– Interacts with other team members to resolve problems, distribute tasks and plan future steps; contributes to team interactions by consultation, collaboration, teamwork and task-sharing.

Supervision Received
Reports to Dr. Pavlidis. Work is reviewed in terms of achievement of specific project objectives.

Supervision Given
Expected to assist and advise other team members including students who are supervised by Dr. Pavlidis. May participate in supervision of more junior personnel such as undergraduate research assistants.

Consequence of Error/Judgement
Receives general direction from supervisors but is expected to exercise their own judgement and independence with respect to the execution of assigned tasks. It is expected that the individual will be a strong participant in the design and direction of the analyses and software development, not just following an existing specification.

This position must maintain reasonable standards of work quality and effectiveness. Failure to correctly perform analysis task can result in the failure of research projects and significant costs. Failure to correctly implement software could lead to rewriting of the code and lost time.

Qualifications
– Undergraduate degree in a relevant discipline. MSc degree is advantageous.
– Minimum of two years experience or the equivalent combination of education and experience.
– Experience with statistical and computational approaches to the analysis of genomic and genetic data sets required.
– Knowledge of Java programming is required. Ability to implement web interfaces with JavaScript frameworks would be beneficial.
– Programming skills should include at least one scripting language (e.g. Python, bash), and the candidate must be proficient at working in a Linux-based environment.
– Good knowledge of SQL databases is required. Knowledge of the R statistical programming environment is highly desired.
– Must show initiative and independence in day-to-day work.
– Must have excellent spoken and written English communication skills.

Equity and diversity are essential to academic excellence. An open and diverse community fosters the inclusion of voices that have been underrepresented or discouraged. We encourage applications from members of groups that have been marginalized on any grounds enumerated under the B.C. Human Rights Code, including sex, sexual orientation, gender identity or expression, racialization, disability, political belief, religion, marital or family status, age, and/or status as a First Nation, Metis, Inuit, or Indigenous person.

All qualified candidates are encouraged to apply; however Canadians and permanent residents will be given priority.

Seeking one Postdoctoral Fellow or Research Associate to work on NEXT GENERATION CELL THERAPY PROCESS ENGINEERING

Research Program Overview

One position is available in the Zandstra Stem Cell Bioengineering laboratory (http://stemcellbioengineering.ca/), in the School of Biomedical Engineering, affiliated with the Michael Smith Laboratories, at the University of British Columbia’s main Vancouver campus. The successful candidate will be expected to investigate the use of stem cells, including pluripotent stem cells (PSC), to develop manufacturing platforms to grow blood stem and progenitor cells towards T-cell progenitors and other differentiated blood cells (e.g. natural killer cells) using bioprocess engineering strategies. Experience that matches our goals and efforts in the automation and feedback controlled sensor space is of particular interest. Our well-funded multidisciplinary program integrates researchers in stem cell biology, biological computation, microfabrication, developmental biology, process engineering and cell therapy, with the goal of developing new cell-based therapeutics to treat disease. The incumbent would be expected to take leadership roles in connection to our fundamental stem cell engineering work on cell and tissue manufacturing strategies, working both on new projects and in collaboration with industry to accelerate our efforts to manufacture therapeutically relevant blood cells from stem cells.

Qualifications

PhD required.  Background in bioengineering and process engineering required, with a focus on bioreactor technology and cell therapies.

Seeking a creative individual who can integrate bioengineering, genomic and developmental biology strategies on projects focusing on blood and/or pluripotent stem cell differentiation to blood lineages using bioreactor systems.  The ability to further integrate with related projects in the lab involving synthetic biology and computational biology, artificial intelligence, and automation technologies is desirable. Ideal candidates must have experience in some or all of the below:

• Bioreactor design and operation – essential
• Cell therapy applications – essential
• Process engineering
• Blood systems and/or developmental biology
• Mammalian cell and molecular biology
• Stem cell biology
• Flow cytometry
• Computational biology
• Automation
• AI

Individuals must also:

• Work well in a goal-oriented team environment
• Have a proven track record of research accomplishments (i.e. publication record)
• Possess excellent communication skills – both verbal and written
• Have the ability to work independently and organize own workload
• Have the ability to design and analyze experiments, keep meticulous records of experiments and data, report on research progress and outcomes openly, and review methodologies in response to feedback &
• Have the ability to update knowledge in their specialized area and implement relevant technologies to advance the project.

Project overview

Bioreactor-led processes for blood cell production at scale

 To transform bench-top stem cell biology research into commercially viable bio-manufacturing practices, we are focusing on the core engineering principles of bioreactor design, feedback control, automation and scale-up, and mathematical modeling.  We use a variety of bioreactor designs e.g. development of suspension bioreactors for PSC or closed-system bioreactors for feedback regulated growth of blood stem cells.  Our foundational work in PSC-derived mesoderm and blood development complements our leadership in establishing new technologies to accelerate the therapeutic use of human umbilical cord blood (UCB) derived blood stem cells. We pioneered strategies for the production of these cells in automated feedback controlled bioreactors, which we moved forward into clinical trials with key collaborators.  Our ability to efficiently generate adult stem cell and PSC-derived blood progenitor cells opens exceptional opportunities to generate functional differentiated cell types. We recently demonstrated that progenitor T-cells can be generated in a defined artificial thymic niche.  This project will work to combine PSC and blood stem cell engineering and bioreactor expansion strategies with our in-house platforms to grow blood cells at scale.

Other considerations

The Zandstra laboratory is situated on UBC Vancouver campus in the Biomedical Research Centre, and is also affiliated with the Michael Smith Laboratories.  Aspects of this project may be performed in part as a collaboration with an industry partner.

This position is available from July 1^st, 2019 and will be based on a one-year renewable contract, extendable depending on funding availability. Salary will be commensurate with qualifications and experience.  Candidates are strongly encouraged to apply for competitive fellowship awards.

A letter of application, accompanied by a detailed curriculum vitae including a list of publications, and contact details for 3 references, should be sent by email to:

Professor Peter Zandstra
zandstra.lab@ubc.ca

Please include “Bioreactor PDF search” in the e-mail subject line.  Applications will remain open until the position is filled.  Review of applications will begin immediately and continue until the position is filled.  We will contact you only if invited for an interview.

Equity and diversity are essential to academic excellence. An open and diverse community fosters the inclusion of voices that have been underrepresented or discouraged. We encourage applications from members of groups that have been marginalized on any grounds enumerated under the B.C. Human Rights Code, including sex, sexual orientation, gender identity or expression, racialization, disability, political belief, religion, marital or family status, age, and/or status as a First Nation, Metis, Inuit, or Indigenous person.

All qualified candidates are encouraged to apply; however Canadians and permanent residents will be given priority.

The laboratory of Dr. Joerg Bohlmann at The University of British Columbia in Vancouver is looking for a Research Associate to fill a position starting in the fall of 2019. The anticipated start date is November 1, 2019. The Bohlmann lab is part of the Michael Smith Laboratories and the Department of Botany and Department of Forest and Conservation Sciences. The lab is located in a well-equipped research facility that provides a stimulating international and multidisciplinary research environment.

The position is focused on research to elucidate how the bioproduct montbretin A and related metabolites, are produced in nature and to translate this knowledge for bioengineering of plants and microorganisms. Another second focus of the position is on terpene bioengineering. The successful candidate is expected to have completed their PhD and at least four years of postdoctoral research experience. The successful candidate must have demonstrated research experience in both flavonoid and terpene biochemistry. Specifically, the candidate must have demonstrated experience with (1) flavonoid and terpenoid metabolite analyses by LCMS and GCMS; (2) gene discovery by genome- and transcriptome analysis and biochemical characterization of terpene synthase, cytochromes P450, UDP-dependent glycosyltransferase, and acyltransferase; (3) metabolic pathway engineering of terpenes and flavonoids in E. coli, yeast and tobacco. Demonstrated experience must be documented with first-author publications in impact-factor (>5) journals. The successful candidate must have demonstrated experience in the preparation of research proposals for funding agencies and patent applications. 

Applications should send by email to Dr. Joerg Bohlmann (bohlmann@msl.ubc.ca) with a Curriculum Vitae and a Letter of Motivation. Please include “Research Associate Position in Bioproducts” in the email subject line; incorrectly addressed applications will not be considered. Please indicate your legal status to work in Canada.

The salary will be commensurate with qualifications and experience. The position is available starting fall 2019. Applications will be reviewed after October 15, 2019 and the position will remain open until filled.

Equity and diversity are essential to academic excellence. An open and diverse community fosters the inclusion of voices that have been underrepresented or discouraged. We encourage applications from members of groups that have been marginalized on any grounds enumerated under the B.C. Human Rights Code, including sex, sexual orientation, gender identity or expression, racialization, disability, political belief, religion, marital or family status, age, and/or status as a First Nation, Metis, Inuit, or Indigenous person.

All qualified candidates are encouraged to apply; however, Canadians and permanent residents of Canada will be given priority.